About me
I am a Ph.D student studying at School of Electircal Engineering and Computer Science, Washington State Unversity in Pullman, WA. Currently, I am working with Dr. Ananth Kalyanaraman on High Performance Computing, Computational Biology, and Graph algorithms.
Research
- Research Assistant, Washington State University
- Parallel algorithms and software for identifying protein families in large-scale metagenomic data. - scaling to thousands of processors on millions of sequences.
- Algorithms and software for organellar genome sequencing and targeted resequencing.
- A computational framework for apple genome sequencing.
- Research Intern, Pacific Northwest National Laboratory
- Research Assistant, National E&T Center of HPC, Tongji University
Publications
[2010] The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics, doi:10.1038/ng.654
[2010] C. Wu, A. Kalyanaraman, W. Cannon. A scalable parallel algorithm for large-scale protein sequence homology detection. Proc. 39th International Conference on Parallel Processing (ICPP'2010), San Diego, CA. September 13-16. pp. 333-342
[2008] C. Wu, A. Kalyanaraman. An efficient parallel approach for identifying protein families in large-scale metagenomic data sets. Proc. ACM/IEEE Supercomputing Conference (SC'08), Austin, TX, November 15-21. pp. 1-10
[2007] C. Wu, A. Kalyanaraman, A. Dhingra. An efficient computational framework for amplifying arbitrarily long conserved DNA sequences. Proc. LSS Computational Systems Bioinformatics (CSB'07), San Diego, CA, August 13-17. More...